Core Course Topics

A 3D printed model of a lung from MSK's Biomedical Engineering Service.
A 3D printed model of a lung from MSK's Biomedical Engineering Service.

Fall Semester 

 

Imaging: 

  • Imaging at different scales
  • Physics of converting a 3D object into a 2D image
  • Electron microscopy
  • Light microscopy
  • Whole body imaging 

Genetics: 

  • Nature and types of mutations
  • CRISPR techniques and application
  • Forward and reverse genetics
  • Drosophila model systems
  • Mouse genetics 

Biochemistry: 

  • Molecular techniques for the analysis of DNA, RNA, and protein
  • Protein production and purification
  • Post-translational modifications
  • Protein-nucleic acid interactions 

Genomics: 

  • Basic overview of genomes
  • Technology platforms for genomics
  • Sequencing techniques and approaches
  • Library construction
  • Single-cell analyses 

Quantitative and Computational Biology: 

  • Overview of Unix and R
  • Review and plotting of TCGA data
  • RNA-seq
  • Single-cell RNA-seq
  • ChIP-seq  

Foundations

  • drug delivery
  • nanomaterials
  • instrumentation
  • tissue engineering 

Cancer Imaging 

  • Optical (microscopy and intravital)
  • Acoustic (including ultrasound)
  • Nuclear imaging (PET, SPECT, and CT) as well as magnetic resonance imaging (MRI/MRS). 

Genetic Engineering 

  • Tools and concepts that can be applied to laboratory research. 
  • Benefits and risks
  • Latest research and technologies advancing the science of genetic principles explored during the Experimental Biology course  

Spring Semester

 

  • Cellular, molecular, and biochemical aspects of the immune system
  • How immune responses function in physiology. 
  • Development of the immune system and the biological functions of its major components.  
  • Understanding intellectual property
  • Evaluating the market for a technology
  • Building a basic financial model
  • Establishing funding mechanisms
  • Assessing regulatory issues
  • Developing a business plan.  
  • Cancer as a disease
  • Genetic mechanisms
  • Cancer signaling
  • Computational biology and oncology
  • Cancer metabolism
  • Tumor heterogeneity
  • Cancer modeling
  • Tumor microenvironments
  • Metastasis
  • Targeted therapies
  • Immunotherapy